Paper accepted at LOUHI @ EMNLP
Published:
Our paper describing version 1.0 of the GGPONC corpus will be presented at the LOUHI workshop at EMNLP.
Posts by Tags
acl
amia
Paper accepted at AMIA 2021 Annual Symposium
Published:
Our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence” featuring the Next Generation Evidence Browser will be presented at the AMIA Annual Symposium in November ‘21.
Distinguished Paper Award at AMIA Annual Symposium
Published:
I am excited that our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence”, presented at the AMIA Annual Symposium received a Distinguished Paper Award.
bioinformatics
Paper published in Briefings in Bioinformatics
Published:
Our paper “Knowledge bases and software support for variant interpretation in precision oncology” has been published in Briefings in Bioinformatics! Thanks to all collaborators from the HiGHmed consortium.
ebm
Paper accepted at AMIA 2021 Annual Symposium
Published:
Our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence” featuring the Next Generation Evidence Browser will be presented at the AMIA Annual Symposium in November ‘21.
Distinguished Paper Award at AMIA Annual Symposium
Published:
I am excited that our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence”, presented at the AMIA Annual Symposium received a Distinguished Paper Award.
ggponc
Version 1.0 of GGPONC publicly available
Published:
Version 1.0 of the GGPONC medical text corpus is now available to researchers: Link
Paper accepted at LOUHI @ EMNLP
Published:
Our paper describing version 1.0 of the GGPONC corpus will be presented at the LOUHI workshop at EMNLP.
Article about GGPONC in Gesundhyte.de
Published:
We have published an article in the German Digital Health magazine “Gesundhyte.de” about the role of NLP in evidence-based medicine and our GGPONC corpus.
1st GGPONC User Meeting
Published:
I have organized a workshop with experts from both the German clinical NLP and the clinical guideline communities, to deepen the dialogue that we have started with our GGPONC project. Check out the event website for details.
GGPONC 2.0 @ LREC
Published:
Our paper for the new release of GGPONC 2.0 has been accepted at LREC! The new dataset is currently the largest, freely distributable annotated corpus of German medical text (1.87M tokens, 250K annotations). We also created baseline NER models with HuggingFace transformers.
Talk at GIN Conference in Toronto
Published:
I gave a talk at the GIN 2022 Conference in Toronto about “Continuous Surveillance of Clinical Practice Guidelines through Natural Language Processing - Experiences from the GGPONC Project”. It was a very inspiring event with great conversations about the role NLP can play in guideline development and evidence synthesis.
highmed
Paper published in Briefings in Bioinformatics
Published:
Our paper “Knowledge bases and software support for variant interpretation in precision oncology” has been published in Briefings in Bioinformatics! Thanks to all collaborators from the HiGHmed consortium.
nge
Paper accepted at AMIA 2021 Annual Symposium
Published:
Our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence” featuring the Next Generation Evidence Browser will be presented at the AMIA Annual Symposium in November ‘21.
Distinguished Paper Award at AMIA Annual Symposium
Published:
I am excited that our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence”, presented at the AMIA Annual Symposium received a Distinguished Paper Award.
nlp
Version 1.0 of GGPONC publicly available
Published:
Version 1.0 of the GGPONC medical text corpus is now available to researchers: Link
Paper accepted at LOUHI @ EMNLP
Published:
Our paper describing version 1.0 of the GGPONC corpus will be presented at the LOUHI workshop at EMNLP.
Article about GGPONC in Gesundhyte.de
Published:
We have published an article in the German Digital Health magazine “Gesundhyte.de” about the role of NLP in evidence-based medicine and our GGPONC corpus.
Paper accepted at AMIA 2021 Annual Symposium
Published:
Our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence” featuring the Next Generation Evidence Browser will be presented at the AMIA Annual Symposium in November ‘21.
Distinguished Paper Award at AMIA Annual Symposium
Published:
I am excited that our paper “Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence”, presented at the AMIA Annual Symposium received a Distinguished Paper Award.
1st GGPONC User Meeting
Published:
I have organized a workshop with experts from both the German clinical NLP and the clinical guideline communities, to deepen the dialogue that we have started with our GGPONC project. Check out the event website for details.
GGPONC 2.0 @ LREC
Published:
Our paper for the new release of GGPONC 2.0 has been accepted at LREC! The new dataset is currently the largest, freely distributable annotated corpus of German medical text (1.87M tokens, 250K annotations). We also created baseline NER models with HuggingFace transformers.
1st place at BioASQ DisTEMIST Entity Linking Track
Published:
Our contribution to the DisTEMIST shared task reached the 1st place in subtrack 2 (entity linking) and 2nd place in subtrack 1 (entity recognition). These are the results.
Talk at GIN Conference in Toronto
Published:
I gave a talk at the GIN 2022 Conference in Toronto about “Continuous Surveillance of Clinical Practice Guidelines through Natural Language Processing - Experiences from the GGPONC Project”. It was a very inspiring event with great conversations about the role NLP can play in guideline development and evidence synthesis.
FairEval implementation on HuggingFace
Published:
We have published an implementation of FairEval on HuggingFace, which allows to get a detailed breakdown of errors for sequence labeling tasks (we consider mostly NER).
Two papers accepted at AIME
Published:
I am happy to announce that two papers got accepted at the International Conference of Artificial Intelligence in Medicine AIME 2023:
xMEN Toolkit
Published:
We have released xMEN - a Toolkit for Cross-Lingual Medical Entity Normalization on GitHub.
oncology
Paper published in Briefings in Bioinformatics
Published:
Our paper “Knowledge bases and software support for variant interpretation in precision oncology” has been published in Briefings in Bioinformatics! Thanks to all collaborators from the HiGHmed consortium.